options

Executable Output


* [MAQAO] Info: Detected 96 Lprof instances in ip-172-31-47-249.ec2.internal. 
If this is incorrect, rerun with number-processes-per-node=X
LAMMPS (22 Jul 2025)
OMP_NUM_THREADS environment is not set. Defaulting to 1 thread.
  using 1 OpenMP thread(s) per MPI task
Lattice spacing in x,y,z = 3.615 3.615 3.615
Created orthogonal box = (0 0 0) to (1156.8 578.4 578.4)
  6 by 4 by 4 MPI processor grid
Created 32768000 atoms
  using lattice units in orthogonal box = (0 0 0) to (1156.8 578.4 578.4)
  create_atoms CPU = 0.067 seconds
Neighbor list info ...
  update: every = 1 steps, delay = 5 steps, check = yes
  max neighbors/atom: 2000, page size: 100000
  master list distance cutoff = 5.95
  ghost atom cutoff = 5.95
  binsize = 2.975, bins = 389 195 195
  1 neighbor lists, perpetual/occasional/extra = 1 0 0
  (1) pair eam, perpetual
      attributes: half, newton on
      pair build: half/bin/atomonly/newton
      stencil: half/bin/3d
      bin: standard
Setting up Verlet run ...
  Unit style    : metal
  Current step  : 0
  Time step     : 0.005
Per MPI rank memory allocation (min/avg/max) = 133.3 | 135.2 | 136.8 Mbytes
   Step          Temp          E_pair         E_mol          TotEng         Press     
         0   1600          -1.1599872e+08  0             -1.0922177e+08  18704.157    
        10   475.61659     -1.1120972e+08  0             -1.091952e+08   64949.732    
Loop time of 2.86297 on 96 procs for 10 steps with 32768000 atoms

Performance: 1.509 ns/day, 15.905 hours/ns, 3.493 timesteps/s, 114.454 Matom-step/s
99.7% CPU use with 96 MPI tasks x 1 OpenMP threads

MPI task timing breakdown:
Section |  min time  |  avg time  |  max time  |%varavg| %total
---------------------------------------------------------------
Pair    | 2.1583     | 2.2025     | 2.246      |   1.4 | 76.93
Neigh   | 0.31644    | 0.32074    | 0.3282     |   0.4 | 11.20
Comm    | 0.06743    | 0.11324    | 0.15753    |   6.6 |  3.96
Output  | 0.0028486  | 0.0029595  | 0.0032144  |   0.2 |  0.10
Modify  | 0.16723    | 0.1811     | 0.18722    |   0.8 |  6.33
Other   |            | 0.04239    |            |       |  1.48

Nlocal:         341333 ave      342550 max      340635 min
Histogram: 39 25 0 0 0 0 0 0 11 21
Nghost:        87173.1 ave       88346 max       85099 min
Histogram: 32 0 0 0 0 0 0 0 2 62
Neighs:    1.28138e+07 ave 1.28704e+07 max 1.27717e+07 min
Histogram: 12 18 14 17 3 0 4 12 5 11

Total # of neighbors = 1.2301205e+09
Ave neighs/atom = 37.540299
Neighbor list builds = 1
Dangerous builds = 0
Setting up Verlet run ...
  Unit style    : metal
  Current step  : 10
  Time step     : 0.005
Per MPI rank memory allocation (min/avg/max) = 133.3 | 135.3 | 137.2 Mbytes
   Step          Temp          E_pair         E_mol          TotEng         Press     
        10   475.61659     -1.1120972e+08  0             -1.091952e+08   64949.732    
        50   780.66035     -1.1250592e+08  0             -1.0919935e+08  52288.914    
       100   798.44003     -1.1258168e+08  0             -1.0919981e+08  51469.262    
       150   797.61933     -1.1257822e+08  0             -1.0919983e+08  51525.545    
       200   797.49403     -1.1257768e+08  0             -1.0919982e+08  51542.639    
       250   797.70218     -1.1257857e+08  0             -1.0919983e+08  51533.704    
       300   797.73162     -1.125787e+08   0             -1.0919983e+08  51536.615    
       350   797.75135     -1.1257877e+08  0             -1.0919982e+08  51536.709    
       400   797.8072      -1.1257901e+08  0             -1.0919982e+08  51535.509    
       450   797.71547     -1.1257861e+08  0             -1.0919981e+08  51541.299    
       500   797.776       -1.1257887e+08  0             -1.0919981e+08  51540.358    
       510   797.79902     -1.1257896e+08  0             -1.0919981e+08  51537.731    
Loop time of 202.085 on 96 procs for 500 steps with 32768000 atoms

Performance: 1.069 ns/day, 22.454 hours/ns, 2.474 timesteps/s, 81.075 Matom-step/s
99.7% CPU use with 96 MPI tasks x 1 OpenMP threads

MPI task timing breakdown:
Section |  min time  |  avg time  |  max time  |%varavg| %total
---------------------------------------------------------------
Pair    | 152.6      | 155.02     | 156.55     |   8.7 | 76.71
Neigh   | 29.065     | 29.849     | 30.624     |   8.0 | 14.77
Comm    | 4.4702     | 6.5399     | 9.5706     |  59.2 |  3.24
Output  | 0.031419   | 0.03277    | 0.040629   |   0.9 |  0.02
Modify  | 8.2528     | 8.8913     | 9.1269     |   9.0 |  4.40
Other   |            | 1.747      |            |       |  0.86

Nlocal:         341333 ave      343033 max      340317 min
Histogram: 11 27 22 3 2 1 6 10 10 4
Nghost:        87062.9 ave       88763 max       84612 min
Histogram: 7 17 7 1 0 1 1 31 22 9
Neighs:    1.28843e+07 ave 1.29586e+07 max 1.28319e+07 min
Histogram: 4 17 22 15 8 4 10 2 11 3

Total # of neighbors = 1.2368917e+09
Ave neighs/atom = 37.746939
Neighbor list builds = 86
Dangerous builds = 22
Total wall time: 0:03:26


[MAQAO] Info: 95/96 lprof instances finished


Your experiment path is /home/eoseret/Tools/QaaS/qaas_runs/175-397-2310/intel/LAMMPS/run/base_runs/compilers/gcc_3/run_1753974403/OV1_500_steps_gcc_3/tools/lprof_npsu_run_0

To display your profiling results:
################################################################################################################################################################################################################
#    LEVEL    |     REPORT     |                                                                                    COMMAND                                                                                    #
################################################################################################################################################################################################################
#  Functions  |  Cluster-wide  |  maqao lprof -df xp=/home/eoseret/Tools/QaaS/qaas_runs/175-397-2310/intel/LAMMPS/run/base_runs/compilers/gcc_3/run_1753974403/OV1_500_steps_gcc_3/tools/lprof_npsu_run_0      #
#  Functions  |  Per-node      |  maqao lprof -df -dn xp=/home/eoseret/Tools/QaaS/qaas_runs/175-397-2310/intel/LAMMPS/run/base_runs/compilers/gcc_3/run_1753974403/OV1_500_steps_gcc_3/tools/lprof_npsu_run_0  #
#  Functions  |  Per-process   |  maqao lprof -df -dp xp=/home/eoseret/Tools/QaaS/qaas_runs/175-397-2310/intel/LAMMPS/run/base_runs/compilers/gcc_3/run_1753974403/OV1_500_steps_gcc_3/tools/lprof_npsu_run_0  #
#  Functions  |  Per-thread    |  maqao lprof -df -dt xp=/home/eoseret/Tools/QaaS/qaas_runs/175-397-2310/intel/LAMMPS/run/base_runs/compilers/gcc_3/run_1753974403/OV1_500_steps_gcc_3/tools/lprof_npsu_run_0  #
#  Loops      |  Cluster-wide  |  maqao lprof -dl xp=/home/eoseret/Tools/QaaS/qaas_runs/175-397-2310/intel/LAMMPS/run/base_runs/compilers/gcc_3/run_1753974403/OV1_500_steps_gcc_3/tools/lprof_npsu_run_0      #
#  Loops      |  Per-node      |  maqao lprof -dl -dn xp=/home/eoseret/Tools/QaaS/qaas_runs/175-397-2310/intel/LAMMPS/run/base_runs/compilers/gcc_3/run_1753974403/OV1_500_steps_gcc_3/tools/lprof_npsu_run_0  #
#  Loops      |  Per-process   |  maqao lprof -dl -dp xp=/home/eoseret/Tools/QaaS/qaas_runs/175-397-2310/intel/LAMMPS/run/base_runs/compilers/gcc_3/run_1753974403/OV1_500_steps_gcc_3/tools/lprof_npsu_run_0  #
#  Loops      |  Per-thread    |  maqao lprof -dl -dt xp=/home/eoseret/Tools/QaaS/qaas_runs/175-397-2310/intel/LAMMPS/run/base_runs/compilers/gcc_3/run_1753974403/OV1_500_steps_gcc_3/tools/lprof_npsu_run_0  #
################################################################################################################################################################################################################

×